species:   Rhsol
pid:       PID0619
parent:    Rhi-milR-41
paralog:   
locus:     KB317782.1:26092-26166
matures:   ['CACCGAGAAGGCUGCUCUGUACUA', 'GUGCACCGUCGCUUUCUUGGCCAU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317782.1:26092-26166

1 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

        **************************      ***************************        
CCCACCGAUGAGUGCACCGUCGCUUUCUUGGCCAUGCACCUCACCGAGAAGGCUGCUCUGUACUACGAAGGAGGC
.((.((..((((((((..((.((((((((((............)))))))))).))..)))))).))..)).)).
-----------------------------------------CACCGAGAAGGCUGCUCUGUACUA---------- l=24 a=0 c
-----------GUGCACCGUCGCUUUCUUGGCCAU---------------------------------------- l=24 a=0 c*
------------------------------------------ACCGAGAAGGCUGCUCUGUACUACG-------- l=25 a=1 ma
----------AGUGCACCGUCGCUUUCUUGGCCA----------------------------------------- l=24 a=0 ma*

------------------------------------------ACCGAGAAGGCUGCUCUGUACUACG-------- l=25 a=1 (ma)
-------------------------------------------CCGAGAAGGCUGCUCUGUACU----------- l=21 a=1 
-------------------------------------------CCGAGAAGGCUGCUCUGUACUAC--------- l=23 a=1 

mb-01011
ax-1001001
ku-01
ss-100011101110
fn-011
